The four chapels at the epistle side of the San Agustin Church is shown and described.

The Chapel of Legazpi was originally dedicated to St. Faustus which was sold in 1594 as the final resting place of Sargento Mayor Juan de Morones and his family. On the other hand, the remains of Legazpi and that of Juan de Salcedo were already interred here. During the British invasion of 1762, the various tombs were despoiled in search of hidden treasure. When the Augustinians returned a year later, they gathered some of the bones scattered in the various chapels and placed it in one common tombstone.

There are more than a dozen chapels inside the church of San Agustin with altars from various periods and architectural styles (baroque and neoclassical) with dedicatees varying over time depending on their patrons and changes done by the friars.

It was the practice in previous centuries that the mortal remains of, usually, prominent persons were buried inside the church. This was so since these families were patrons or benefactors who, in one way or another, contributed to its construction, donated precious jewels, saints, vestments and other church decorations or even paid for the upkeep of a chapel. In some instances, they sponsored the priests who were assigned there. In some other instances, they paid for the chapel or a slot for their final resting place.

At the far end of the church interior is the presbitery where one can find the altar mayor or main altar. It is made of carara marble and was installed in 1934 which replaced the original made of wood.

The huge retablo just behind it catches the eye. Its top is crowned by the image of the Holy Spirit in the form of a dove with Saint Augustin at the lower center dressed in white robes flanked by two angels. The grand niche contains the statue of St. Paul.

Trompe l’oeil is French for fools the eye. It first appeared in the Philippines in San Agustin church in Intramuros where the ceilings and walls are decorated with it. At first, one would think that these are carved decorations, a perfect play of light and shadows until upon close scrutiny, the three dimensional effect, are infact just painted on the ceiling.